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Christopher Boughter's Projects

abeta_histogram icon abeta_histogram

Create a script to read in AFM data (made originally for ABeta40 data analysis) and plot it in a histogram/quantitate that histogram. Made 3 versions of it and figured this is "git version manager"

aims icon aims

AIMS - Automated Immune Molecule Separator: An analysis pipeline for distinguishing distinct subsets of Ig and MHC molecules. See below site for documentation

aims_doc icon aims_doc

Finally get a nicer documentation page started

aims_manuscripts icon aims_manuscripts

This is a repository for the explicit replication of AIMS analysis published in a range of manuscripts

auto_vina_analysis icon auto_vina_analysis

In this code, I create a high throughput Autodock Vina pipeline for testing the docking of a large array of lipid-like molecules in an MHC-like molecule

basketstats icon basketstats

Here is a rough draft of everything I'm working on for this new program

boughter.github.io icon boughter.github.io

Creating a repository to host my first every personal website. Never done this before, but it might be a good skill to have.

cdr_bioinformatics icon cdr_bioinformatics

Trying to automatically pull out CDR loop sequences from a given antibody full sequence. Fairly rudimentary for now, but it works! Compares well to human selected CDR loop sequences.

countasap icon countasap

An easy to use python-based package for generating ASAPseq Count Matrices from FASTQ files

ml_practice icon ml_practice

Trying to make a classifier of a limited dataset (for now). Mostly for practice, but may become functional sometime.

overunderproject icon overunderproject

This is my first big attempt at creating a ML Model to predict where regular season NFL games will be over/under the predicted score

pre_memseal icon pre_memseal

A repository for storing and documenting pre-processing scripts for various 'Omics pipelines in association with the MEMSEAL DARPA project.

presto icon presto

An automated pipeline for the analysis of TCR-pMHC structures deposited to the PDB

sim_visualization icon sim_visualization

Let's see if I can get a nice folder that stores all of the different ways that I visualize data from my protein-protein simulations

string_method_automate icon string_method_automate

So Benoit Roux wants to move away from using DHAM to optimize an initial string path for calculating the binding free energy of protein-protein interactions... Here I try to do that

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