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auto-lv-modeling

Automating Model Generation For Image-Based Cardiac Flow Simulation

hypre

Parallel solvers for sparse linear systems featuring multigrid methods.

ib2d

An easy to use immersed boundary method in 2D, with full implementations in MATLAB and Python that contains over 60 built-in examples, including multiple options for fiber-structure models and advection-diffusion, Boussinesq approximations, and/or artificial forcing.

kalman-and-bayesian-filters-in-python

Kalman Filter book using Jupyter Notebook. Focuses on building intuition and experience, not formal proofs. Includes Kalman filters,extended Kalman filters, unscented Kalman filters, particle filters, and more. All exercises include solutions.

latex-ocr

pix2tex: Using a ViT to convert images of equations into LaTeX code.

p4pdes

C and Python examples from my book on using PETSc to solve PDEs

project-based-learning

Curated list of project-based tutorials

rajaperf

RAJA Performance Suite

simpleelastix

Multi-lingual medical image registration library

simvascular

A comprehensive opensource software package providing a complete pipeline from medical image data segmentation to patient specific blood flow simulation and analysis.

simvascular.github.io

SimVascular website

slicerextension-vmtk

svfsi

A multi-physics finite element solver for patient-specific blood flow simulation including fluid-structure interaction and cardiac electrophysiology

svfsi-tests

This repository contains cases to test svFSI

svfsi-tools

Tools for svFSI including mesh converter, post-processing scripts, etc.