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basenji2-pytorch

PyTorch implementation of Basenji2.

bisb-bootcamp-2021-module09

ceng-176

Data cleaning, analysis, and visualization for Chemical Engineering labs.

conformal-prediction

Lightweight, useful implementation of conformal prediction on real data. (a.k.a. conformal inference)

datahacks2020

Science Track: A Case Study of Race in Diabetes Healthcare

dlaub_helpers

Helper functions for my work, mainly bioinformatics related.

dlaub_setup

Setup files for me.

dlm-transfer-learning

DNA language model transfer learning.

genome-loader

Pipeline for efficient genomic data processing.

github-slideshow

A robot powered training repository :robot:

hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

lucid

med263_wi22_metagenomics_tutorial

Metagenomics tutorial for MED 263

med264_aou_asd_drug_disparities

methyldrift

Bayesian inference of biological age of tissues subject to differential methylation drift.

minfi_pipeline

Scripts for running minfi to process Illumina methylation arrays.

motifdata

Motif representation and analysis toolkit in Python

pydeseq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

seqdata

Annotated sequence data

seqpro

Genomic Sequencing Preprocessing toolkit

sgkit

Statistical genetics toolkit

tritonhacks-data-viz

Data visualization/data science starter kit for TritonHacks 2021, a high-school hackathon.

ushuffle

A useful tool for shuffling biological sequences while preserving the k-let counts