Comments (3)
My own personal preference is to go with the simplest model that works reasonably well, but that's just based on my own intuition that these things tend to emphasize discrimination accuracy more than they should, at the expense of biological plausibility. The idea of running the two together is interesting, though, and might be worth pursuing!
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You should be able to just pass in a "params" vector just as if you were calling it from enmtools.maxent().
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Hi @danlwarren, I used ENMeval to pick some appropriate maxent parameters for the two species I'd like to compare using the identity test. I settled on different parameters for both species. (e.g. L 4 for Species A, which has fewer points than Species B, for which the model built using LQH 1 performs best).
What parameters would you recommend for the pseudo-replicates in that case? Average the regularization multipliers? Select the most (or least) complex features? Blob them both together, re-run ENMeval, and see what comes out there? I wonder what makes the most biological sense.
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Related Issues (20)
- Consider using modEVA package for model fit
- How to plot my overlap HOT 2
- CSV file problem? HOT 1
- SpatRaster error in enmtools.maxent() HOT 12
- Species 1 does not have a species.name set!
- Checking breadth and overlap from ASCII files produced by maxent HOT 3
- When I build species objects, I keep getting a Warning message: [buffer] empty SpatVector
- Different Empirical overlap values for identity and background tests HOT 7
- Issue with clamp.env while running identity.test() HOT 2
- Ecospat background tests broken HOT 1
- An unusual value for Shoener's D calculated using raster.overlap HOT 2
- check.species is no longer reordering lat/lon columns correctly HOT 1
- species.from.file returning "Error in if (!is.na(presence.points)) { : the condition has length > 1" HOT 1
- interactive.plot.enmtools.species isn't working correctly HOT 2
- combine.species doesn't work with one species HOT 1
- In enmtools.maxent: .local(object, ...):missing layers (or wrong names) HOT 3
- Add new metrics from Somodi et al.?
- Idea for improving significance testing via RTS-style tests for ENMTools 2 HOT 1
- Fatal Issue encountered when running enmtool.aoc for any ENMs HOT 3
- Error in Warren's I Calculation HOT 3
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