darogan Goto Github PK
Name: Russell Hamilton
Type: User
Twitter: drrshamilton
Location: Cambridge
Blog: www.darogan.co.uk/wp
Name: Russell Hamilton
Type: User
Twitter: drrshamilton
Location: Cambridge
Blog: www.darogan.co.uk/wp
RNA-Seq Analysis Scripts to accompany: Balmas, E., et al (2018) Maternal group 2 innate lymphoid cells control fetal growth and protect from endotoxin-induced abortion in mice. doi:https://doi.org/10.1101/348755
RNA-Seq Analysis Scripts to accompany: Filipovic, (2018) Molecular definition of group 1 innate lymphoid cells in the mouse uterus. [Nature Communications, https://doi.org/10.1038/s41467-018-06918-3][bioRxiv, https://doi.org/10.1101/330068]
Turco, M.Y. et al (2018) Trophoblast organoids as a model for maternal–fetal interactions during human placentation. Nature. https://doi.org/10.1038/s41586-018-0753-3
Bacon, W.A., Hamilton, R.S., Yu, Z., Kieckbusch, J., Hawkes, D., Krzak, A., Abell, C., Colucci, F. & Charnock-Jones, D.S. (2018) Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Front. Immunol., 9:2523 https://doi.org/10.3389/fimmu.2018.02523
Preflow vs Postflow RNA-seq
ASE_Meta_Analysis
Genetic disruption of folate metabolism causes epigenetic instability in sperm and distinguishes HIRA as a biomarker of maternal epigenetic inheritance
A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
make complex heatmaps as well as self define annotation graphics
Ong, C-K & Hamilton, R.S. (2018) Constructing Computational Pipelines Encyclopedia of Bioinformatics and Computational Biology, 3, 135-143 https://doi.org/10.1016/B978-0-12-809633-8.20090-3
Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:
Custom Protocols for Demultiplexing and Trimming raw DropSeq experiment fastq files
Supplementary Materials: For Exploring RNA Conformational Space Under Sparse Distance Restraints
Prater, M., Hamilton, R.S., Yung, H-W, Sharkey, A.M., Robson, P, Jauniaux, E., Charnock-Jones, D.S., Burton G.J. & Cindrova-Davies, T. (2020) RNA-Seq reveals changes in human placental metabolism, transport and endocrinology function in the first-second trimester transition. Submitted
Embeddable genomic visualization component based on the Integrative Genomics Viewer
Kyprianou, C., Christodoulou, N., Hamilton, R.S., Nahaboo, W., Boomgaard, D., Amadei, G., Migeotte, I. & Zernicka-Goetz, M.i (2020) Basement membrane remodelling regulates mouse embryogenesis. https://doi.org/10.1038/s41586-020-2264-2
A web based tool to manage and automate the processing of publicly available datasets.
MetEor: Metastable Epialleles on Request
ParticleStats: Open source software for the analysis of intracellular particle motility and cytoskeletal polarity
Toolbox for circular statistics with Python
Analysing the positions of ribosomal proteins in the ribosome 3D structure
RNA2DSearch is an open source bioinformatics pipeline for searching for RNA secondary structures involved in RNA localization on a genomic scale.
A simple Bisulfite FastQ Read Simulator (BiQRS)
Pisapia, L., Hamilton, R.S., D’Agostino, V, Pasqualea, B., Strazzullo, M., Provenzano, A., Gianfrani, C. & Del Pozzo, G. (2018) Tristetraprolin/ZFP36 regulates the turnover of autoimmune-associated HLA-DQ mRNAs. DOI:https://doi.org/10.1101/337907
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.