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access-to-data-using-pic-sure-api

bioinformatics-workshops

Workshops presented by the Gladstone Bioinformatics Core

bulk_rna_seq

RNA seq analysis using Bioconductor (analysis built on limma, edgeR)

ck37r

R functions for project setup, machine learning, SuperLearner, parallelization, and targeted learning.

cookbook-2nd

IPython Cookbook, Second Edition, by Cyrille Rossant, Packt Publishing 2018

datasciencecoursera

The Data Scientist's Toolbox: Course Project

datasharing

The Leek group guide to data sharing

dataviz001

deep-learning-in-r

Workshop (6 hours): Deep learning in R using Keras. Building & training deep nets, image classification, transfer learning, text analysis, visualization

dna_seq

Workshop materials for DNA Variant Analysis with R Bioconductor

genesis

GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness

ggcharts

googlesheets

Google Spreadsheets R API

hospital-readmissions

Modeling hospital readmissions

machine-learning

:earth_americas: machine learning tutorials (mainly in Python3)

machine-learning-in-r

Workshop (6 hours): preprocessing, cross-validation, lasso, decision trees, random forest, xgboost, superlearner ensembles

metrics-graphics

A library optimized for concise, principled data graphics and layouts.

plotly

An interactive graphing library for R

scrna_seq

scRNA seq analysis using Seurat V3

sisg2023_association_mapping

Course website for SISG 2023 Module 15

sisg_2023

SISG 2023 Module 18: Computational Pipeline for WGS Data

splitstackshape

R functions to split concatenated data, conveniently stack columns of data.frames, and conveniently reshape data.frames.

statcomp597d

Introduction to Statistical Computation

test-repo

test_repo

testrepo