dattalab Goto Github PK

allenminer

allen brain atlas exploratory software

azure-acquire

Toolkit to acquire data using Microsoft Azure camera

behavior_pirctx_gonogo

Behavior Arduino & Matlab codes

celljail

cortical-representations-odour-space

d_code

2Photon Imaging and Electrophysiology Analysis code for the Datta Lab @ HMS

datta-scanimage

Datta Lab Fork of Scanimage and associated MATLAB code

dopamine-reinforces-spontaneous-behavior

Repository holding the jupyter notebooks and python packages used to generate figures in our paper: "Spontaneous behaviour is structured by reinforcement without explicit reward"

gui

Software for electrophysiology data acquisition

image_registration

Image Registration using DFTs

imreg

Linear and non-linear image registration methods, using scipy and numpy.

jax-moseq

keypoint-moseq

kinect2-nidaq

Interface for simultaneous NI-DAQ and Kinect v2 acquisition

luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

mongo

The Mongo Database

mongoadmin

Admin interface for MongoDB built using Django and Bootstrap. Features a JSON editor written in JavaScript that supports nested JSON objects.

mongowrapper

A wrapper for MongoDB that makes saving and loading NumPy arrays transparent.

moseq-drugs

moseq-vame

Variational Animal Motion Embedding

moseq2-app

MoSeq2 Jupyter Notebook platform used to run all of the MoSeq2 tools in a GUI.

moseq2-docs

This documentation is out of date.

moseq2-extract

Here it comes...

moseq2-model

Python scripts for linking kinect-extraction to pybasicbayes

moseq2-pca

Code for computing pcs from extracted data to submit for modeling

moseq2-viz

Visualization toolbox for MoSeq2

non-neuronal-covid-anosmia

orbbec-acquire

Toolkit to acquire data using Orbbec Femto cameras.

piriform

population-coding-in-an-innately-relevant-olfactory-area