davymoon Goto Github PK

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

awesome-pytorch-list

A comprehensive list of pytorch related content on github,such as different models,implementations,helper libraries,tutorials etc.

ballgown_code

analysis code used in Ballgown paper

book

:green_book:我的个人书籍学习和收藏

canvas

Canvas - Copy number variant (CNV) calling from DNA sequencing data

ccs

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

cdna_cupcake

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

chroma-pytorch

Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

circleseq

cs231n.github.io

Public facing notes page

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 300 universities from 55 countries including Stanford, MIT, Harvard, and Cambridge.

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被55个国家的300所大学用于教学。

darts

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

deep_learning_examples

Examples of using deep learning in Bioinformatics

dssp

Splice site prediction using deep neural networks.

eqp-cluster

Unix-based RNA-seq quantification pipeline

expansionhunter

A tool for estimating repeat sizes

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

htseq

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

imagen-pytorch

Implementation of Imagen, Google's Text-to-Image Neural Network, in Pytorch

intron-retention-paper

isoseq_sa3nup

Documentation and Developers Code Base for Iso-Seq SMRTAnalysis 3.x and beyond

kallisto

Near-optimal RNA-Seq quantification

kallisto_paper_analysis

Analysis from kallisto paper

kma

Keep Me Around: Intron Retention Detection

knowledgebase

General knowledge for HBC computing

lucida

Speech and Vision Based Intelligent Personal Assistant

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow