dbmi-pitt Goto Github PK

act-i2b2-load

ACT i2b2 load sql v0

act-network

ACT - Accrual to Clinical Trials Network Repository

act-network-tools

act-ontology

ahrq-cds-connect-authoring-tool

The CDS Authoring Tool is part of the CDS Connect project https://cds.ahrq.gov/, sponsored by the Agency for Healthcare Research and Quality (AHRQ), and developed under contract with AHRQ by MITRE's CAMH FFRDC.

annotator.js

aurora-meta

Aurora metadata portal

aurora-us-consortium

bcrf-search-api

BCRF search web service and associated pieces to create an index

bcrf-translation

temporary bcrf-translation repo

bias-variance-smoothing-shrinking

A Shiny app covering issues of bias and variance in defining cohorts for precision medicine

bioinf_teachingnlp

NLP education notebooks for biomedical informatics students

birads

Information Extraction from Radiology Report

ccri-402

Center for Clinical Research Informatics

ccri-data-characterization

Data characterization tools used across multiple CCRI projects

client-py

Python SMART on FHIR client

clinicaltransformerner

a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms

comradedb

covid-19-kr

Knowledge graph and causal learning related to COVID 19

cqf-ruler

CQL Measure Processing Component

cql-testing-framework

AHRQ-CDS CQL Testing Framework to allow CQL authors to more easily develop and run test cases for validating CQL-based CDS logic, regardless of how that CQL was developed (e.g., by hand, in the AT, etc). This is intended to be a developer-facing tool, run on the command-line; it has no server components.

curriculum

SlideTutor curriculum: knowledge bases, configurations, cases, examples etc.

data_distillery

Repo for the University of Pittsburgh/HuBMAP part of the CFDE Data Distillery. The repo is primarily to track issues or requests.

dbmi-annotator

based on annotator.js, an annotation framework enable user account and annotation permission management and templating annotation plugin in biomedical domain.

ddi-cds

All drug-drug interaction CDS rules written in Drools from the AHRQ funded projects

ddievidencetypeclassifiers

Combine machine learning and knowledge representation to facilitate the process of assessing evidence from studies of drug-drug interaction by using an existing ontology of evidence types, DIDEO, as the backbone to develop a series of classifiers that categorize a DDI study’s evidence type based on its textual characteristics.

dikb-evidence-analytics

A suite of programs that implement the DIKB principals of representing drug drug interaction evidence and knowledge.

dikb-evidencebase

dikb-micropublication

Micropublication and Open Data Annotation for drug-drug interaction evidence synthesis

dikb-portal

A web portal for the DIKB MP evidence base