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.dotfiles

bioconvert

bioservices

Access to Biological Web Services from Python.

catppuccin-tmux

💽 Soothing pastel theme for Tmux!

circlator

A tool to circularize genome assemblies

damona

singularity environment manager (application to NGS and bioinformatics)

django-bitfield

A BitField extension for Django Models

full-stack-fastapi-postgresql

Full stack, modern web application generator. Using FastAPI, PostgreSQL as database, Docker, automatic HTTPS and more.

lora

Run assembler (Canu, flye, hifiasm) on a set of long read files

mergegi

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

pool_variant_calling

pyvif

Python Virus Integration Finder detects integration site of virus in human genome using capture pacbio.

raw-qc

Pipeline for quality controls and trimming of raw sequencing data

react-interview

react-native

A framework for building native apps with React.

react-native-image-crop-picker

iOS/Android image picker with support for camera, video, configurable compression, multiple images and cropping

react-native-mobeye-geolocation

react-native-netinfo

React Native Network Info API for Android & iOS

react-native-permissions

Check and request user permissions in ReactNative (iOS and Android)

react-native-splash-screen-demo

rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

secure-code-game

sequana

Sequana: a set of Snakemake NGS pipelines

sequana-wrappers

The Sequana Wrapper Repository is a collection of reusable wrappers used in Sequana Pipelines.

sequana_pipeline_template

a cookiecutter sequana pipeline template

sequana_pipetools

A set of tools to help building or using sequana pipelines

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

sniffles

Structural variation caller using third generation sequencing

variant_calling