Name: Santhilal Subhash
Type: User
Company: Cold Spring Harbor Laboratory
Bio: Investigating field of biology by applying logics of computer science, statistics and mathematics.
https://decodebiology.github.io
Twitter: decodebiology
Location: New York, US
Blog: https://decodebiology.org
Santhilal Subhash's Projects
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
Check the Phred Scale quality of sequencing files
Creates a rarefaction curve to measure complexity in RNA Seq data using start position
Visualize flow between nodes in a directed acyclic network.
Profile Santhilal Subhash
Bayesian haplotype-based polymorphism discovery and genotyping.
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Create anatograms using ggplot2
Automatically exported from code.google.com/p/interproscan
Mount your android device on Ubuntu
Test data for MultiQC. See https://github.com/ewels/MultiQC
QBRC Somatic Mutation Calling Pipeline
RPKM for RNASeq counts
An R package for t-SNE (t-Distributed Stochastic Neighbor Embedding)
Useful tools for working with Salmon output
Single-Cell Analysis in Python. Scales to >1M cells.
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Extract Transitions from PARCLIP data. This is beta version, this can be improved by including more description about the results and also with graphical visualization.
Python package for calculating tissue-specificity metrics from gene expression data.