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361division

361 Division - Scientific Training, Education and Learning

aur_neo4j-enterprise

Updates for the `neo4j-enterprise` Arch Linux package

bio2bel-cookiecutter

A cookiecutter bio2bel repositories

bioinfo-tools

Collection of Python and other data analysis resources

carnival

CAusal Reasoning for Network Identification with integer VALue programming in R

cellnopt

Training of logic models of signalling networks using prior knowledge networks and perturbation data.

chembl_webresource_client

Python client for accessing ChEMBL webservices.

cosmosr

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

data_tools

Collection of Python functions and classes designed to make data scientists' life easier.

decoupler

R package to infer biological activities from omics data using a collection of methods.

dorothea

Discriminant Regulon Enrichment Analysis. A set of tools to compute individual TF activities

hummus

jupyter_contrib_nbextensions

A collection of various notebook extensions for Jupyter

liana

LIANA: a LIgand-receptor ANalysis frAmework

logger

A lightweight, modern and flexible, log4j and futile.logger inspired logging utility for R

massspec-toolbox

Automatically exported from code.google.com/p/massspec-toolbox

matplotlib

matplotlib: plotting with Python

mistyr

Multiview Intercellular SpaTial modeling framework

natmi

NATMI: Network Analysis Toolkit for the Multicellular Interactions

nbsphinx

:ledger: Sphinx source parser for Jupyter notebooks

ocean

R package for metabolic enzyme enrichment anaylsis

progeny

R package for Pathway RespOnsive GENe activity inference

progeny-py

PROGENY Python implementation

pyreadr

Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.

python-igraph

Python interface for igraph

renv

renv: Project environments for R.

requests-cache

Persistent HTTP cache for python requests

tqdm

A fast, extensible progress bar for Python and CLI

unexport

:eight_spoked_asterisk: Unexport is a linter that tries to keep the __all __ in your Python modules always up to date.

vaccipy

Automatische Terminbuchung für den Corona Impfterminservice.