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align_uniform

Understanding Contrastive Representation Learning through Alignment and Uniformity on the Hypersphere.

alphafold

Open source code for AlphaFold.

awesome-adversarial-machine-learning

A curated list of awesome adversarial machine learning resources

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

awesome-self-supervised-learning

A curated list of awesome self-supervised methods

benchmarking-gnns

Repository for benchmarking graph neural networks

bio_embeddings

Get protein embeddings from protein sequences

breast_cancer_classifier

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

cell-death-signatures

Analysis code for NAR manuscript

chemcpa

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

chemprop

Message Passing Neural Networks for Molecule Property Prediction

cifar10-fast

cmapm

Connectivity Map analysis in MATLAB

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

code_snippets

A repo with random short code snippets

complex

Source code for experiments in the papers "Complex Embeddings for Simple Link Prediction" (ICML 2016) and "Knowledge Graph Completion via Complex Tensor Factorization" (JMLR 2017).

conv_arithmetic

A technical report on convolution arithmetic in the context of deep learning

ctrp-reference

Reference MATLAB implementation of foundational analyses for Cancer Therapeutics Response Portal (CTRP; http://portals.broadinstitute.org/ctrp)

deepfri

Deep functional residue identification

deepnf

Deep Network Fusion (deepNF)

deepspeed

DeepSpeed is a deep learning optimization library that makes distributed training easy, efficient, and effective.

deepul

descriptastorus

Descriptor computation(chemistry) and (optional) storage for machine learning

detectron

FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.

detectron2

Detectron2 is FAIR's next-generation research platform for object detection and segmentation.

dgcnn

dgl

Python package built to ease deep learning on graph, on top of existing DL frameworks.

diffusion

Denoising Diffusion Probabilistic Models

dl-interpretability-compbio

dlaicourse

Notebooks for learning deep learning