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2bitseq

aragorn

tRNA and tmRNA finding

artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

bestblasthit

A small utility to parse blast output and return only the best hit

bga

Automated Bacterial Genome Annotation (BGA).

bigint

An implementation of a fixed point integer datatype for the C programming language.

bioconda-recipes

Conda recipes for the bioconda channel.

blast-python

Implementation of BLAST(Basic Local Alignment Search Tool) algorithm in Python 3.5 using Numpy.

bloom_filter

breseq_tools

A script to count the number of SPSs per gene

circualign

A tool to align circular genomes on a common feature

codingframe

A tool to identify which of the six frames of a DNA backbone is the protein coding frame

convotate

covpare

A program to compare the read coverages of two genome assemblies

cpython_extension_template

Templates to let you quickly create Python C extensions

dedupe

:id: A python library for accurate and scalable fuzzy matching, record deduplication and entity-resolution.

deprekate.github.io

test

diamond

Accelerated BLAST compatible local sequence aligner.

em4gmm

Fast clustering Expectation Maximization algorithm for Gaussian Mixture Models.

fasta36

A python port of the fasta36 genomic sequence search code

fastdemux

A program to demultiplex fastq files

fastderep

fastpath

A program to find the path through a network of nodes.

find_overlaps

fix_names

function_align

Code to multiple-align sets of ordered genes by their function

genbank

Python code to work with Genbank files

genbank_template

A boilerplate template that uses the genbank pypi package to work with genbank files

genotate

Prokaryotic and phage genome annotation tool

ggbiplot2

A biplot based on ggplot2