Comments (1)
fungs
commented on August 16, 2024
Just to prove that this is technically possible: I ran Kraken with the full 100 GiB index from a notebook computer, serving the index files via SSHFS by setting memory over-commit feature in Linux via (echo 1 > /proc/sys/vm/overcommit_memory).
Processed 267079 sequences (156682865 bp) ...
267178 sequences (159.10 Mbp) processed in 263697.346s (0.1 Kseq/m, 0.04 Mbp/m).
266913 sequences classified (99.90%)
265 sequences unclassified (0.10%)real 4394m58.581s
user 5m14.828s
sys 32m11.800s
It was certainly slow but mostly due to the network access. This system had 3 GiB of memory.
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