devonjkohler Goto Github PK

bioscrape

BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)

bioscrapeppl

Probabilistic Programming implementation of bioscrape pacakge

biosysinference

causal-prog-rule-models

causal_inference_project

devonjkohler.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

dkohler

genesetvalidator

R package to check correlations in MSigDB pathways using MS-based proteomics experimental data.

gillespieppl

The Gillespie algorithm implemented in different probabilistic programming languages.

msbayesimp

mscausality

Causal inference methods for mass spectrometry(MS)-based proteomics

msstatsbayes

msstatslip

msstatsptm

Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments

msstatsptm_simulations

Repository containing the simulation data and analysis used to evaluate MSstatsPTM

msstatsshinydocker

Contains the docker image for MSstatsShiny

msstatstmtptm

R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling

omega_implementations

A variety of models implemented using the probabilistic programming language Omega

proppa

Source code for the implementation of the ProPPA platform

pyprob

A probabilistic programming system for simulators and high-performance computing (HPC), based on PyTorch

sbi

Simulation-based inference toolkit

single_cell_scm

sysbiodmm

y0

❓y0 (pronounced "why not?") is for causal inference in Python