Devon Kohler's Projects
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
Probabilistic Programming implementation of bioscrape pacakge
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
R package to check correlations in MSigDB pathways using MS-based proteomics experimental data.
The Gillespie algorithm implemented in different probabilistic programming languages.
Causal inference methods for mass spectrometry(MS)-based proteomics
Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
Repository containing the simulation data and analysis used to evaluate MSstatsPTM
Contains the docker image for MSstatsShiny
R-based package for detecting differencially abundant post translational modifications (PTM) in shotgun mass spectrometry-bsed proteomic experiments with tandem mass tag (TMT) labeling
A variety of models implemented using the probabilistic programming language Omega
Source code for the implementation of the ProPPA platform
A probabilistic programming system for simulators and high-performance computing (HPC), based on PyTorch
Simulation-based inference toolkit
❓y0 (pronounced "why not?") is for causal inference in Python