dhakim87 Goto Github PK

american-gut-web

The website for the American Gut Project participant portal

cho-workflow

Workflow for combining RNA seq data with iCHOv1 metabolic model

diff_snps

Diffs the output file format of the Geneious tool for snp computation so you can tell what's shared and what's different between two monocultures relative to some reference

dm_assist

emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

evident

Effect size calculations for microbiome data

imsms_study

Gut microbiome study in multiple sclerosis

metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

microsetta-admin

microsetta-private-api

A private microservice to support The Microsetta Initiative

momi

Molecular mimicry scripts tailored to search for myelin mimics in the gut microbiome

ndlines

Find n dimensional lines in huge dimension spaces and name them

netseq

Ranking of candidate cyclopeptides by analysis of spectral networks

oauth_server_test

Test implementation of node's oauth2_server necessary model hooks and backend

padownload

Downloads xml files from protein atlas api, does simple parsing and bulk download of images

pavel-proj

Clique Finding Project

pretty-meta

Java Swing force vector layout for metabolic networks

protein-atlas-distance

Scripts for converting human protein atlas staining imagery into a distance metric between proteins.

qiita

Qiita - A multi-omics databasing effort

sam-share

wol-cluster

woltka

Web of Life Toolkit App

zebra_filter

Filtering out false taxonomic hits from shotgun sequencing based on genome coverage