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chinese-pyrosetta

conbap

code for ConBAP

data-science-from-scratch

code for Data Science From Scratch book

deep-protein-generation

deeplearning

Python for《Deep Learning》，该书为《深度学习》(花书) 数学推导、原理剖析与源码级别代码实现

denvis

Deep Neural Virtual Screening (DENVIS)

dgraphdta

a novel DTA predition method using graph neural network

dlkcat

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

evcouplings

Evolutionary couplings from protein and RNA sequence alignments

funcliblocal

Rosetta Funclib

genscore

kcat_prediction

ligandmpnn

lm-gvp

LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure

localcolabfold

ColabFold on your local PC

ml-visuals

🎨 ML Visuals contains figures and templates which you can reuse and customize to improve your scientific writing.

mutant-protein-stability

Modeling the effects of mutations in proteins using PyRosetta

nn4dms

Neural networks for deep mutational scanning data

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

plip

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

prost

A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.

protein_generator

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

proteinmpnn

Code for the ProteinMPNN paper

pytorch-vae

A Collection of Variational Autoencoders (VAE) in PyTorch.

rtmscore

statistic

collecting books, papers and docs.

tankbind

Open source code for TankBind. Galixir Tenchnologies

test

test for github

topfit

tuning_playbook_zh_cn

一本系统地教你将深度学习模型的性能最大化的战术手册。