Comments (7)
limei0307
commented on August 22, 2024
Hi,
Thanks for your interest in our library!
I can reproduce this issue. Please try 'pip install sympy' to install sympy firstly.
Thanks
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smoes-prime
commented on August 22, 2024
I have installed sympy via pip and the same error message appears, I've also tried import sympy as sym, and from sympy import *, and just simply import sympy.
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smoes-prime
commented on August 22, 2024
I just realized an error I made earlier, I am not on pytorch 1.8, but rather 1.7.1 since I have CUDA 10.1 Other than that the system info is accurate.
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limei0307
commented on August 22, 2024
Hi,
Could you please provide all your package?
Thanks
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limei0307
commented on August 22, 2024
Hi,
I can reproduce this issue on PyTorch 1.7.1 and solve it by installing sympy.
And I think if you have PyTorch < 1.8.0, you need to install torch-geometric via Pip Wheels or from source.
Here is my package list on Pytorch 1.7.1, Python 3.6, torch-geometric 2.0.1:
# Name Version Build Channel
_libgcc_mutex 0.1 main
_openmp_mutex 4.5 1_gnu
absl-py 0.14.0 pypi_0 pypi
argon2-cffi 21.1.0 pypi_0 pypi
async-generator 1.10 pypi_0 pypi
attrs 21.2.0 pypi_0 pypi
backcall 0.2.0 pypi_0 pypi
blas 1.0 mkl
bleach 4.1.0 pypi_0 pypi
ca-certificates 2021.7.5 h06a4308_1
cachetools 4.2.2 pypi_0 pypi
captum 0.2.0 pypi_0 pypi
certifi 2021.5.30 py36h06a4308_0
cffi 1.14.6 pypi_0 pypi
charset-normalizer 2.0.6 pypi_0 pypi
cilog 1.2.0 pypi_0 pypi
cloudpickle 2.0.0 pypi_0 pypi
cudatoolkit 10.1.243 h6bb024c_0
cycler 0.10.0 pypi_0 pypi
dataclasses 0.8 pyh4f3eec9_6
decorator 4.4.2 pypi_0 pypi
defusedxml 0.7.1 pypi_0 pypi
dive-into-graphs 0.1.1 pypi_0 pypi
entrypoints 0.3 pypi_0 pypi
et-xmlfile 1.1.0 pypi_0 pypi
freetype 2.10.4 h5ab3b9f_0
google-auth 1.35.0 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
googledrivedownloader 0.4 pypi_0 pypi
grpcio 1.40.0 pypi_0 pypi
idna 3.2 pypi_0 pypi
importlib-metadata 4.8.1 pypi_0 pypi
intel-openmp 2021.3.0 h06a4308_3350
ipykernel 5.5.5 pypi_0 pypi
ipython 7.16.1 pypi_0 pypi
ipython-genutils 0.2.0 pypi_0 pypi
ipywidgets 7.6.5 pypi_0 pypi
isodate 0.6.0 pypi_0 pypi
jedi 0.18.0 pypi_0 pypi
jinja2 3.0.1 pypi_0 pypi
joblib 1.0.1 pypi_0 pypi
jpeg 9b h024ee3a_2
jsonschema 3.2.0 pypi_0 pypi
jupyter 1.0.0 pypi_0 pypi
jupyter-client 7.0.3 pypi_0 pypi
jupyter-console 6.4.0 pypi_0 pypi
jupyter-core 4.8.1 pypi_0 pypi
jupyterlab-pygments 0.1.2 pypi_0 pypi
jupyterlab-widgets 1.0.2 pypi_0 pypi
kiwisolver 1.3.1 pypi_0 pypi
lcms2 2.12 h3be6417_0
ld_impl_linux-64 2.35.1 h7274673_9
libffi 3.3 he6710b0_2
libgcc-ng 9.3.0 h5101ec6_17
libgomp 9.3.0 h5101ec6_17
libpng 1.6.37 hbc83047_0
libstdcxx-ng 9.3.0 hd4cf53a_17
libtiff 4.2.0 h85742a9_0
libuv 1.40.0 h7b6447c_0
libwebp-base 1.2.0 h27cfd23_0
llvmlite 0.36.0 pypi_0 pypi
lz4-c 1.9.3 h295c915_1
markdown 3.3.4 pypi_0 pypi
markupsafe 2.0.1 pypi_0 pypi
matplotlib 3.3.4 pypi_0 pypi
mistune 0.8.4 pypi_0 pypi
mkl 2020.2 256
mkl-service 2.3.0 py36he8ac12f_0
mkl_fft 1.3.0 py36h54f3939_0
mkl_random 1.1.1 py36h0573a6f_0
mpmath 1.2.1 pypi_0 pypi
mypy-extensions 0.4.3 pypi_0 pypi
nbclient 0.5.4 pypi_0 pypi
nbconvert 6.0.7 pypi_0 pypi
nbformat 5.1.3 pypi_0 pypi
ncurses 6.2 he6710b0_1
nest-asyncio 1.5.1 pypi_0 pypi
networkx 2.5.1 pypi_0 pypi
ninja 1.10.2 hff7bd54_1
notebook 6.4.4 pypi_0 pypi
numba 0.53.1 pypi_0 pypi
numpy 1.19.2 py36h54aff64_0
numpy-base 1.19.2 py36hfa32c7d_0
oauthlib 3.1.1 pypi_0 pypi
olefile 0.46 py36_0
openjpeg 2.4.0 h3ad879b_0
openpyxl 3.0.9 pypi_0 pypi
openssl 1.1.1l h7f8727e_0
packaging 21.0 pypi_0 pypi
pandas 1.1.5 pypi_0 pypi
pandocfilters 1.5.0 pypi_0 pypi
parso 0.8.2 pypi_0 pypi
pexpect 4.8.0 pypi_0 pypi
pickleshare 0.7.5 pypi_0 pypi
pillow 8.3.1 py36h2c7a002_0
pip 21.0.1 py36h06a4308_0
prometheus-client 0.11.0 pypi_0 pypi
prompt-toolkit 3.0.20 pypi_0 pypi
protobuf 3.18.0 pypi_0 pypi
ptyprocess 0.7.0 pypi_0 pypi
pyasn1 0.4.8 pypi_0 pypi
pyasn1-modules 0.2.8 pypi_0 pypi
pycparser 2.20 pypi_0 pypi
pygments 2.10.0 pypi_0 pypi
pyparsing 2.4.7 pypi_0 pypi
pyrsistent 0.18.0 pypi_0 pypi
python 3.6.13 h12debd9_1
python-dateutil 2.8.2 pypi_0 pypi
pytorch 1.7.1 py3.6_cuda10.1.243_cudnn7.6.3_0 pytorch
pytz 2021.1 pypi_0 pypi
pyyaml 5.4.1 pypi_0 pypi
pyzmq 22.3.0 pypi_0 pypi
qtconsole 5.1.1 pypi_0 pypi
qtpy 1.11.2 pypi_0 pypi
rdflib 5.0.0 pypi_0 pypi
rdkit-pypi 2021.3.5.1 pypi_0 pypi
readline 8.1 h27cfd23_0
requests 2.26.0 pypi_0 pypi
requests-oauthlib 1.3.0 pypi_0 pypi
rsa 4.7.2 pypi_0 pypi
scikit-learn 0.24.2 pypi_0 pypi
scipy 1.5.4 pypi_0 pypi
send2trash 1.8.0 pypi_0 pypi
setuptools 58.0.4 py36h06a4308_0
shap 0.39.0 pypi_0 pypi
six 1.16.0 pyhd3eb1b0_0
slicer 0.0.7 pypi_0 pypi
sqlite 3.36.0 hc218d9a_0
sympy 1.8 pypi_0 pypi
tabulate 0.8.9 pypi_0 pypi
tensorboard 2.6.0 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.0 pypi_0 pypi
terminado 0.12.1 pypi_0 pypi
testpath 0.5.0 pypi_0 pypi
threadpoolctl 2.2.0 pypi_0 pypi
tk 8.6.10 hbc83047_0
torch-cluster 1.5.9 pypi_0 pypi
torch-geometric 2.0.1 pypi_0 pypi
torch-scatter 2.0.7 pypi_0 pypi
torch-sparse 0.6.9 pypi_0 pypi
torch-spline-conv 1.2.1 pypi_0 pypi
torchaudio 0.7.2 py36 pytorch
torchvision 0.8.2 py36_cu101 pytorch
tornado 6.1 pypi_0 pypi
tqdm 4.62.3 pypi_0 pypi
traitlets 4.3.3 pypi_0 pypi
typed-argument-parser 1.5.4 pypi_0 pypi
typing-inspect 0.7.1 pypi_0 pypi
typing_extensions 3.10.0.2 pyh06a4308_0
urllib3 1.26.7 pypi_0 pypi
wcwidth 0.2.5 pypi_0 pypi
webencodings 0.5.1 pypi_0 pypi
werkzeug 2.0.1 pypi_0 pypi
wheel 0.37.0 pyhd3eb1b0_1
widgetsnbextension 3.5.1 pypi_0 pypi
xz 5.2.5 h7b6447c_0
yacs 0.1.8 pypi_0 pypi
zipp 3.5.0 pypi_0 pypi
zlib 1.2.11 h7b6447c_3
zstd 1.4.9 haebb681_0
Thanks
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limei0307
commented on August 22, 2024
Hi @smoes-prime,
Are you still having this issue?
Thanks
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smoes-prime
commented on August 22, 2024
I solved it by simply updating my pytorch and PyG version when my sysadmin updated my pod.
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