Name: DKFZ - ODCF
Type: Organization
Bio: GitHub organization for the DKFZ Omics IT and Data Management Core Facility
Location: DKFZ, Heidelberg, Germany
Blog: https://www.dkfz.de/en/forschung/zentrale_einrichtungen/cf-omics/CF_omics.html
aceseqworkflow
Allele-specific copy number estimation with whole genome sequencing
alignmentandqcworkflows
The DKFZ alignment workflow plugin originally developed at the eilslabs
bioinformatic-reproducibility-course
A course on basic tools for reproducibility in bioinformatics
coworkflows
Legacy repository for the COWorkflows plugin
coworkflowsbaseplugin
A basic Roddy plugin for computational oncology workflows
dkfzbiasfilter
ega-cluster-cryptor
parallelise encryption of EGA submissions onto a cluster - a partial EgaCryptor replacement
ega-xml-dl
batch download everything in your EGA or ENA submission account
example-cwlexec-singularity
An example CWL workflow to be run with Singularity on an LSF cluster
fastqindex
A tool to index and extract data from gzipped FASTQ files
fastqindex-integration-testing
Test script(s) to perform integration tests for the FastqIndEx'er
igv-crawler
Crawl any filesystem for genome data, providing one-click opening in IGV. READ ONLY REPOSITORY.
indelcallingworkflow
A Platypus-based workflow for indel calling
ldap-summary
Simple shellscripts to make interaction with LDAP/AD/ldapsearch easier
methylctools
analysis of whole-genome bisulfite sequencing data
methylctools-fingerprint
Fingerprinting code originally part of the the methylCtools of Volker Hovestadt.
nf-arriba
nf-bam2fastq
Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.
odcf-guide
Read-Only mirror; please see GitLab for main repo
reference-data
Code to setup and maintain reference assemblies and accompanying data
rnaseqworkflow
Roddy RNA-seq Workflow Plugin
setup-reference-data
Code and documentation for setting up reference data for the DKFZ-ODCF workflows, including reference genomes and their supplementary files, annotation data, etc.
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
snvcallingworkflow
The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow
sophia
The Sophia structural variation caller. Fork of https://bitbucket.org/utoprak/sophia.
sophiaworkflow
A Roddy plugin to run the Sophia tool.
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
