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adoc-mode

A major-mode for editing AsciiDoc files in Emacs

atlantis

Code used for biomarker discovery using party (building conditional random forests)

awesome-multi-omics

List of software packages for multi-omics analysis

basexclient

cmsclassifier

comppass-plus-cli

R script implementation of CompPASS-Plus.

configure-debian

central configuration program for packages using debconf

cookiecutter-quarto

Cookiecutter Template For Quarto Markdown Analysis

cookiecutter-rasciidoc

Cookiecutter Template for My Style of R AsciiDoc-centered data analysis project

cookiecutter-targets-quarto-website

Cookiecutter template for an analysis using the R targets package and a quarto website for reporting

crayon

R package for colored terminal output

cromppass

Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence

cromppass_webapp

A shiny webapp interface for running a CompPASS analysis using the cRomppass R package

d4

A friendly reusable charts DSL for D3

dnusinow.github.io

To the Point of Collapse - David Nusinow's Blog

doom-emacs-config

My personal doom emacs config

erasciible-mode

Work with paired Rasciidoc and R documents for knitr-driven reproducible document generation

ess

Git development branch

ggplot2

An implementation of the Grammar of Graphics in R

git-annex-zsh-completion

zsh completion for git-annex

gwjgoty

GWJ GOTY Voting Analysis and Visualization

hiver

An R package for creating and plotting 2D and 3D hive plots.

knitr

A general-purpose tool for dynamic report generation in R

medusa2sif

Convert Medusa network files to SIF for transferring from STRING to Cytoscape

morpheus.js

JavaScript matrix visualization and analysis

pheatmap

Pretty heatmaps

polymode

Object oriented framework for multiple emacs modes based on indirect buffers

r-cytoscape.js

Example code to embed Cytoscape.js into a R Shiny application and generate a standalone figures with Cytoscape.js from R

rosalind.info-dnusinow

Problems for rosalind.info solved with GO

sniper

Software for Network Inference of Proteomics Experiments