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1kgenomes-gvcfs

Scripts for creating gVCF files for 1000 genomes data using StarCluster.

azure-benchmark-scripts

Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on Azure

bioconda-recipes

Conda recipes for the bioconda channel.

dnascope-longread-manuscript

docker-actions-test

A test repository for GitHub actions

find_denovo

A simple tool for identifying *de novo* variants from a VCF/BCF file.

gatk

Official code repository for GATK versions 4 and up

gatk-protected

Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

htslib

C library for high-throughput sequencing data formats

mosaic-from-barcodes

Detect mosaic variants using barcode information

mosaicism-sensitivity

nf-sentieon

POC Nextflow pipeline to run Sentieon software

nvidia-clara-parabricks-somatic-variant-calling-aws-blog

AWS Blog (Somatic Variant Calling )

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

sds

Simple Dynamic Strings library for C

sentieon-google-genomics

Run Sentieon pipelines on Google Cloud Platform

sentieon-scripts

Helper scripts for biological data processing from Sentieon

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

submixbam

Combined mixing and subsampling for simulation of mosaic variants.

terraform

Terraform configuration files for the Sentieon software

tigger-sv

toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

variant-segregation

Add a variant segregation metric to a VCF file.