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Clint's Projects

atem-loader icon atem-loader

Script to pull slides from a source, like Google Slides, and load them into predefined slots in an ATEM video switcher

bamclipper icon bamclipper

Remove primer sequence from BAM alignments by soft-clipping

dynsilo icon dynsilo

Perl script to keep your Name Silo domain record in sync with your IP address

edge icon edge

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

paidirt icon paidirt

A bioinformatics package to assemble amplicon sequencing reads and classify them

picframe_colepd icon picframe_colepd

A WiFi picture frame allowing for remote photo uploads, using an ESP32-C3 and a 5.6" color E-ink display

poregressive icon poregressive

Suite of tools to analyze nanopore data progressively, in near real time

schedule--sgelk icon schedule--sgelk

Perl module for scheduling tasks, with only using qsub/qstat/qdel. A very portable scheduler.

seqan icon seqan

SeqAn's official repository.

snap icon snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

snippy icon snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

spork-manager icon spork-manager

Parallel process manager for bash. Yeah, it's not the best tool for the job, but when you have it...

taxomias icon taxomias

an easy to use implementation of the NCBI taxonomy database for daily use

taxy icon taxy

A simplified method for accessing NCBI Taxonomy locally, including accession names

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