Comments (3)
I just check the data, and cannot find the problem.
In train_multi_label.json, it has:
"7a6o_AAA": [
"7a6o_AAA",
"7a6o_A"
"7a6o_BBB": [
"7a6o_B",
"7a6o_BBB"
In pdb_labels, it has:
7a6o_A.label.pkl.gz
7a6o_AAA.label.pkl.gz
7a6o_B.label.pkl.gz
7a6o_BBB.label.pkl.gz
In pdb_features, it has:
7a6o_AAA.feature.pkl.gz
7a6o_BBB.feature.pkl.gz
from uni-fold.
I see. Sorry since downloading the full dataset never worked for us, I prepared all the features by myself and I extracted the chain names from mmcif files, which gave me 7a6o_A and 7a6o_B instead of 7a6o_AAA and 7a6o_BBB. Now it makes sense. Thanks for checking it.
from uni-fold.
@henrywotton you now can download the full dataset from ByteDance hosted storage, check the README.
from uni-fold.
Related Issues (20)
- Entries in eval_multi_label.json and eval_sample_weight.json do not exist in pdb_uniprots HOT 1
- pdb_assembly.json does not agree with train_multi_label.json HOT 6
- Missing import in Colab HOT 1
- colab error HOT 8
- Is total_step fixed? HOT 2
- import_jax_weights_ failed on AlphaFold-Multimer 2.3.0 HOT 3
- parameters are missing in the pretrained weights HOT 4
- Multi node training HOT 3
- Could not find path to the "hhblits" binary
- Run Uni-Fold with Bohrium Apps
- FileNotFoundError: No such file or directory: '/C.feature.pkl.gz' HOT 1
- questions on installing on Ubuntu Linux 22.04 HOT 1
- recreating homo_search.py output -- minimal version HOT 3
- competition multimer analysis -- does chain order matter? HOT 7
- model name for all alphafold parameters HOT 1
- multi-gpu inference
- convert_unifold_to_alphafold.py?
- UniFold crash: unable to find SCOPdata (a bug that has popped up in ColabFold, & there is a straightforward reason and patch) HOT 2
- Training with linkers
- Symmetry code doesnโt work HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ๐๐๐
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google โค๏ธ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from uni-fold.