Comments (2)
Hey @danafd, eventually this will be written for use on the command line but it isn't ready quite yet. For now I would convert the R data to Python like what is shown here and then follow the instructions for Python. Sorry, hopefully we will get the fully command line version of batch correction ready soon.
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Will give it a try. Thanks!
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Related Issues (20)
- Usage sum of each cell is over 1 HOT 3
- Variance Normalization HOT 1
- How to adjust the convergence limit for the underlying sklearn NMF when using the command-line version of cNMF HOT 4
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