Comments (4)
Coherence is ~0.5-0.6 between Hippocampus and PFC theta in:
Place, R., Farovik, A., Brockmann, M., and Eichenbaum, H. (2016). Bidirectional prefrontal-hippocampal interactions support context-guided memory. Nature Neuroscience 19, 992–994.
and
Adhikari, A., Topiwala, M.A., and Gordon, J.A. (2010). Synchronized Activity between the Ventral Hippocampus and the Medial Prefrontal Cortex during Anxiety. Neuron 65, 257–269.
from jadhav-2016-data-analysis.
"both ripple and epsilon waves have low coherence (<0.2) between CA3 and CA1, indicating that timing of events are established largely independently in the two regions."
Buzsáki, G. (2015). Hippocampal sharp wave-ripple: A cognitive biomarker for episodic memory and planning: HIPPOCAMPAL SHARP WAVE-RIPPLE. Hippocampus 25, 1073–1188.
from jadhav-2016-data-analysis.
Theta (4-12 Hz) coherence between CA1 and mPFC: .32 +/- 0.03
Jones, M.W., and Wilson, M.A. (2005). Theta Rhythms Coordinate Hippocampal–Prefrontal Interactions in a Spatial Memory Task. PLoS Biology 3, e402.
from jadhav-2016-data-analysis.
Theta (4-12 Hz) coherence between CA1 and mPFC is ~0.20 to ~0.30 depending on the part of the task.
Sigurdsson, T., Stark, K.L., Karayiorgou, M., Gogos, J.A., and Gordon, J.A. (2010). Impaired hippocampal–prefrontal synchrony in a genetic mouse model of schizophrenia. Nature 464, 763–767.
from jadhav-2016-data-analysis.
Related Issues (20)
- Histogram of phase delays instead of just average
- t-SNE plot of electrode activity locked to ripple HOT 1
- Decode Ripple events in PFC?
- Fix normalization step in Canonical Coherence
- Compute Connectivity Measures/Power over entire session for baseline HOT 2
- Use the complex coherency to average to look at phase consistency
- Use Long Tao's Ripple Detection method
- SVD is failing on canonical coherence for Animal HPc, Day 6, Epoch 4 HOT 1
- iCA1 coherence won't load after cluster job HOT 1
- Threshold ripple decoding by 0.8 for spectral analysis? HOT 1
- Minimum phase decomposition isn't converging. Hitting max number of iterations first. Need to increase max? HOT 1
- Plot coherence phase delays
- Compare ripples originating from the animals position vs. away from the animal position
- Cherry pick single ripple example and look at measures of directionality in that example
- Histogram of first window after ripple to examine variablity HOT 1
- Inbound vs. Outbound, Early vs. Late fails in aggregation step because there are no ripples for certain sessions HOT 1
- Different LFP start times and number of samples for epoch in bond HOT 3
- Linear distance in linpos files is wrong
- To-Do
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from jadhav-2016-data-analysis.