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edickie avatar edickie commented on July 29, 2024

Just to check, are you running the newest version? If you run ciftify_subject_fmri --help do you see the --FLIRT-to-T1w flag.

I ask because it is a newer option. Although, before this flag was added --FLIRT-to-T1w was the default behaviour so it might be that it is working fine for you...

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NeuroImagingWorld avatar NeuroImagingWorld commented on July 29, 2024

Hi Erin,

You are right, I don't see --FLIRT-to-T1w in help, I just installed latest version. Will keep you posted if we run into any issues.

 Uninstalling ciftify-1.0.1:
 Successfully uninstalled ciftify-1.0.1
 Successfully installed ciftify-2.0.2

Thanks

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NeuroImagingWorld avatar NeuroImagingWorld commented on July 29, 2024

Its working. Thanks

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