Comments (5)
Thanks for lettinge know. Will debug today.
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We think we fixed everything with the 2.0.4-alpha version.
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Hi the install works without a problem, but now I run into an error with niio in ciftify_subject_fmri when it gets to the Subcortical Processing:
Traceback (most recent call last):
File "/apps/psyc/ciftify/2.0.4/ciftify/bin/ciftify_subject_fmri", line 1062, in
main()
File "/apps/psyc/ciftify/2.0.4/ciftify/bin/ciftify_subject_fmri", line 1057, in main
ret = run_ciftify_subject_fmri(settings, tmpdir)
File "/apps/psyc/ciftify/2.0.4/ciftify/bin/ciftify_subject_fmri", line 190, in run_ciftify_subject_fmri
tmpdir)
File "/apps/psyc/ciftify/2.0.4/ciftify/bin/ciftify_subject_fmri", line 893, in subcortical_atlas
func_vx_size = ciftify.niio.voxel_spacing(input_fMRI)
AttributeError: module 'ciftify' has no attribute 'niio'
Here's the last line of the ciftify_subject_fmri.log:
2018-06-23 15:53:57.789319 : Subcortical Processing
VolumefMRI: /fdata/scratch/joseph.orr/adaptcog/fmri/hcp/sub-M80301092/MNINonLinear/Results/task-ritl_acq-MB_run-01/task-ritl_acq-MB_run-01.nii.gz
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Looks like this bug is fixed, thanks!
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Related Issues (20)
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- Error in ciftify_peaktable and ciftify_statclust_report HOT 1
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- Yaml file HOT 3
- Error in ciftify_peaktable HOT 1
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