Name: Edgar Gonzalez-Kozlova.
Type: User
Company: Icahn School of Medicine - Mount Sinai
Bio: Computational Biologist. Currently working with multi-omics. Passionate about immunology, evolution and statistics.
Twitter: EdgarEGK
Location: New York City
Blog: https://eegk.github.io/
Edgar Gonzalez-Kozlova.'s Projects
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Fast and accurate in silico inference of HLA genotypes from RNA-seq
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Cell type pipes for R
This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.
WebGL Clustergrammer JavaScript Library
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
Paula Restrepo's resume/CV
Cell cycle inference in single-cell RNA-seq
downsample columns such that the sum is equal in all columns
Gonzalez-Kozlova Lab
Convert models to LaTeX equations
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Stand-alone Genboree server with core services. The installation package includes GenboreeKB and all dependencies.
Presentation-Ready Data Summary and Analytic Result Tables
Script to automatically create and run IGV snapshot batchscripts
Apache Superset (incubating) is a modern, enterprise-ready business intelligence web application
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
Project: Academic home page Heath Blackmon: evolution, sex chromosomes, phylogenetics