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abis

allergy_aranda_etal

count_data

arcashla

Fast and accurate in silico inference of HLA genotypes from RNA-seq

autoclass

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bindsc

Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

cellpypes

Cell type pipes for R

celltagr

This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.

clustergrammer

WebGL Clustergrammer JavaScript Library

cnmf

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

correlations_4_regen_sacha

covid19_radiology

cv

Paula Restrepo's resume/CV

deepcycle

Cell cycle inference in single-cell RNA-seq

downsample

downsample columns such that the sum is equal in all columns

eegk.github.io

Gonzalez-Kozlova Lab

equatiomatic

Convert models to LaTeX equations

excerpt

Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

fastv

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

genboree

Stand-alone Genboree server with core services. The installation package includes GenboreeKB and all dependencies.

gtsummary

Presentation-Ready Data Summary and Analytic Result Tables

igv-snapshot-automator

Script to automatically create and run IGV snapshot batchscripts

incubator-superset

Apache Superset (incubating) is a modern, enterprise-ready business intelligence web application

legacy_simple_website

magic

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

mogonet

MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.

mvi-lab.github.io

Project: Academic home page Heath Blackmon: evolution, sex chromosomes, phylogenetics