Comments (3)
- Choice of variables:
![image](https://private-user-images.githubusercontent.com/8400682/282636174-db5c5a16-8c74-4b97-add1-64ff9996a23b.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.2fgkILapQM34efvHeI0PJ8AAQfmhUW8RFrU58pEmKj4)
HF's remaining code:
-
Table3
; -
SorensenSummary
; -
ArticleReviewSummary2
from below:
![image](https://private-user-images.githubusercontent.com/8400682/282637640-2081d1b2-74ad-48d4-818f-19c9bfd8d5a4.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.7aHrAyhgb1nBXppH93hP5wfinVC-loJp-9Sy0tSsGcY)
from manyecoevo.
For each summarise*() function, ensure that the documentation uses the roxygen2 function linking tag to make reference to the use of functions operating on single df's rather than the wrapper functions (see, https://stackoverflow.com/questions/25489042/linking-to-other-packages-in-documentation-in-roxygen2-in-r)
-
summarise_analysis_types()
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summarise_variable_counts()
-
summarise_conclusions()
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summarise_model_composition()
-
summarise_sorensen_index()
-
summarise_variable_counts()
from manyecoevo.
Note that in ManyAnalysts much of the data wrangling for descriptive statistics tables has been functionalised in an effort to simplify and debug some knitting execution errors in the supplementary material.
Next steps:
- Rm functions from ManyAnalysts and add to ManyEcoEvo, use gh copilot to add roxygen2 documentation
- For documentation, add family: "Generate descriptive statistics" or similar
- Rebuild packag and increment version number
- Update targets pipeline with descriptive stats
- Regenerate targets, regenerate package objects with usethis::
- Rebuild packag
See also egouldo/ManyAnalysts#34 for corresponding issue in ManyAnalysts manuscript repository.
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Related Issues (20)
- *ALL* model_params outputs return NA....
- Ensure euc yi vars not erroneously being back-transformed HOT 4
- argument name incorrect in fit_MA_mv
- Dealing with Large data objects in package
- Dealing with Large data objects in package HOT 2
- Code styler and tidying
- pkgdown build is failing HOT 1
- Upkeep for ManyEcoEvo (2024)
- double-checking calculation of out-of-sample estimates pipeline
- roxygen2 documentation for all functions HOT 1
- Document implicit exclusions in pipeline
- prepare back-transformation analysis pipeline needs reorganising - duplicated components HOT 1
- low priority: Add missing argument
- raw data columns misnamed
- low priority: bug in conversion
- Replace `case_when()` calls with `case_match()`
- Switch back to lazy loading data HOT 1
- add `parameters::parameters()` method for metaphor models
- Defensive programming / argument checks
- Log-transform yi estimates prior to fitting MA mod
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from manyecoevo.