eisascience Goto Github PK

17-testis-single-cell-r-github-data

17 testis single cell R analysis processing

cellnet

CellNet: network biology applied to stem cell engineering

cellrouter

Reconstruction of complex single-cell trajectories using CellRouter

cellularphenotypes

A comprehensive collection of transcriptomic (and other) markers for identification of individual cells (phenotype, state, etc) at various scopes

docker-data-science

Set up an automated data science environment using Docker

docker_datascience

Rocker/verse based docker image + Goodies

dockerfiles

eisascience.github.io

Eisa Mahyari's GitHub Page

hista

Human Infertility Single-cell Testis Atlas

mcds

MCDS = Multimodal Classsification Dataset Simulator

monet

Monet: An open-source Python package for analyzing and integrating scRNA-Seq data using PCA-based latent spaces

normalizationmethods

An accumulation of normalization methods

pvist

Platform for exploration, analysis, & Visualization of Spatial Transcriptomes (PViST). A shiny app package.

pythonproj

rnaseq

rtlbase

The R Transfer Learning (RTL) Classification Framework - Baseline Implementation v1.0.0

sccustfx

Custom FX used in single-cell analysis and exploration.

scientificosx

Setting up a new mac OSX

scrnaseq_old

Tools and functions for conducting scRNASeq in my pipelines

scrnaseqeisa

shiny

shiny-examples

shinymultisda

ShinyMultiSDA (Shi-mu-sda) is a multi SDA integration Shiny tool

shinysda

Shiny tool to load and browse SDA objects

wong-gold-lewinsohn

TCR Enrichment Analysis (TEA) Webtool

xchromcn_docker

A Docker pipeline to call X chromosome copy number on BAM files