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Brian James's Projects

gbs_snakemake_pipeline icon gbs_snakemake_pipeline

a pipeline based on the utility of snakemake to generate a vcf file from paired end sequencing data obtained from Illumina platforms

phenopi icon phenopi

Timelapse and (future) phenotyping of plant images utilizing raspberry pi cameras and Flask for UX

soybean-tlm icon soybean-tlm

calling Trait, Seg, or Wildtype for numerous Haplotype SNP panels in soybean marker assisted selection lab

tlm-tool icon tlm-tool

a tool for analyzing TLM assay panels and auto-generating a call for each sample based on the TLM algorithm

zygosity-report-tool icon zygosity-report-tool

pull information from Kraken and auto-generate a report that gives zygosity % for each sample in the file

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