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agp_parser

A JBrowse plugin to parse AGP files and display them

apollo

Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

apollo-lsaa

A plugin to Apollo that allows for annotating Alternative Locus across a genome

apollo_domain_classes

A grails plugin that copies the domain classes of Apollo, allowing other plugins to take advantage of the Apollo database objects (ORM)

apollo_lsaa

A grails plugin for Apollo to support annotating genome assemblies

apollo_registration_page

registration page for apollo

aquamine

InterMine source for AquaMine

aquamine_doc

AquaMine documentation

barchartviewer

JBrowse 1 plugin for displaying data in BarChart format

bovinemine

A data mining warehouse for Bos taurus

bovinemine_doc

BovineMine documentation

faangmine_doc

faangmine_intermine

Intermine source for building FAANGMine

fastloader

A JBrowse plugin for working with variable template parameters in BAM, VCF, tabix (the broken up index is "faster", hence fastloader)

ga4ghviewer

A JBrowse plugin for viewing ga4gh data

gccontent

A JBrowse plugin for plotting GC content and GC skew

gwasviewer

A JBrowse plugin for viewing GWAS data

hymenopteramine_doc

HymenopteraMine documentation

hymenopteramine_intermine

InterMine source for HymenopteraMine

hymenopteramine_v1.0

HymenopteraMine v1.0 documentation

hymenopteramine_v1.4

HymenopteraMine v1.4 documentation

im-alias-table

Find alias between gene identifiers using intermine

im-expr-heatmap

Generate a heatmap from BovineMine expression output tables

im-expr-table

Expression table for intermine

intermine

A powerful open source data warehouse system

intermine-api-python-examples

Example Python scripts using the InterMine API

intermine-cdn

JavaScript, Cascading Style Sheet Content Delivery Network

jbrowse_elasticsearch

A JBrowse plugin for generating an elasticsearch database and an express.js adaptor for the Names API

maizemine

InterMine source for MaizeMine

maizemine_doc