elyall Goto Github PK
Name: Evan Lyall
Type: User
Bio: Neuroscientist & Data Engineer; CTO @ Rosebud Biosciences
Location: Castro Valley, CA
Evan Lyall's Projects
acquisitioncode
Code run on master computer to run a two-photon imaging experiment
aws-plugin-for-slurm
A sample integration of AWS services with SLURM
caiman
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
data-on-eks
DoEKS is a tool to build, deploy and scale Data Platforms on Amazon EKS
elyall.github.io
My personal website
evanscode
Code constantly in development for personal use, but is available to all without support.
examples
Example deep learning projects that use wandb's features.
intrinsicimaging
code to acquire and fit intrinsic imaging data
rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
roiselection
Code for selecting ROIs in tif and sbx images
scalingtl
Insight Data Engineering Project
scanpy
Single-cell analysis in Python. Scales to >1M cells.
unirep
UniRep model, usage, and examples.
wandb_on_slurm
Example of how to use Weights & Biases on Slurm
whisk
Fully automated tracking of single rows of whiskers in high-speed video.
whisk_linux_prebuilt
Copy of @nclack's whisk1.1.0 pre-built binaries for linux with very minor python module fixes.
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