Related Issues (20)
- Can't use model.contrasts with categorical variables HOT 2
- Unable to save adata.uns["nhood_adata"] HOT 2
- Retrieving adata.obs_names belonging to each adata.uns["nhood_adata"].obs_names HOT 3
- plotNhoodGraphDA in python version HOT 4
- ValueError: Length mismatch HOT 2
- Add informative error when running plot_nhood_graph before graph construction
- Error in glmFit.default(sely, design, offset = seloffset, dispersion = 0.05, : nrow(design) disagrees with ncol(y) HOT 2
- Where can I find the information about to which neighborhood a cell belongs HOT 2
- Assigning neighbors_key in milopy.core.make_nhoods HOT 1
- Get all cells of a neighborhood given the index_cell HOT 2
- AttributeError: recarray has no attribute columns
- Error in make_nhoods if the reduced dims are in pandas.DataFrame HOT 1
- Interpret the clustering result HOT 2
- Bug: errors if no cells covered for a certain sample
- plotNhoodExpressionDA in milopy?
- DA_nhoods() .iteritems deprecated HOT 3
- annotate_nhood error HOT 2
- make_nhoods Error: Mean of empty slice. HOT 2
- milo.make_nhoods(combined_emb) fails if 'X' was used for nearest neighbors HOT 1
- error with milo.count_nhoods(adata, sample_col="sample") HOT 2
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