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ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

alicyclobacillus-genomic-potential-and-gem-development

analysis-of-maxquant-proteomics-data-with-r

This project involved analysing proteomics data from Maxquant for Halophilic bacteria to investigate the adaptation strategies in varying salt concentrations.

cobra_cbm_tutorial

This a basic tutorial on Constraint-Based Metabolic Modeling based on python-cobra

cobrapy-tutorial

A tutorial on cobrapy

cobrapy_tutorial

Tutorial de modelos de sistemas biológicos con COBRApy.

enuhb

Biotech Researcher

enuhblaise.github.io

escher

Build, share, and embed visualizations of metabolic pathways.

fba_tutorial

Code for running flux balance analysis simulations using Cobrapy

fegenie

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes

genomic-data-science

Genomic data science specialization

github-web-page-from-coursera

With this project, I learnt how to create a personal webpage with Github. This was a coursera campus guided project which i decided to follow up and practice. Hopefully i end up creating a good website from it. Lets see how long this will take.

gp-edit

Guided Project Resource for my coursera project. This is to type any descriptions.

halomonas-elongata-gem

halomonas-elongata-genome-scale-model

The development process of the Halomonas elongata 153B genome scale metabolic network reconstruction. From initial reconstruction to final model submitted in the publication.

mosquito-diversity

Evaluation of Abundance and diversity of mosquito populations in a Tropical forest in Cameroon

ncov_incubation

Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools

python-and-r-programming-course

python-programming-course

s_aureus_gems_collection

In this resporitory, all modifications made within the publication "Curating and comparing 114 Strain-Specific Genome-Scale Models of Staphylococcus aureus" are documented.

single_and_multiple_binning

A snakemake workflow for single- and multi- coverage binning

standard-garch-model-analysis-of-covid-19-pandemic

Modeling the COVID-19 pandemic from January 2020 to May 2022 using a standard GARCH model in R programming. The model can be used to know pandemic characteristics and forecast cases.

synbio_4_tutorial

A cobrapy, cameo tutorial

tutorial_gem_and-_fba

Tutorial for simulation of constraint based models with CobraPy.

tutorials

Teaching materials for cobrapy, cameo, escher and DD-DeCaF