Comments (6)
Hi,
my best guess is that the results are actually empty and this leads to the problem of an empty dataframe in the aggregation script. Please check if there are individual results to be aggregated in this "group".
Cheers, Stephan
from enrichment_analysis.
Hi,
Do you know why the table below looks like that (why no description and pvalues were written)?
Best regards,
Sandra
from enrichment_analysis.
Hi Sandra,
I would require a little more context.
I guess I am looking at results from LOLA?
from enrichment_analysis.
Yes, this table is from LOLACore. But LOLAJaspar also didn't work as expected here.
from enrichment_analysis.
Can you provide more of the result file?
Did GREAT return results?
from enrichment_analysis.
One more question: is the test/example data running correctly? i.e., does it return LOLA results?
If yes, then it has probably something to do with your input data.
from enrichment_analysis.
Related Issues (18)
- update and document all packages to latest version HOT 1
- user-defined database support for LOLA
- TFBS/motif enrichment analysis HOT 5
- PPI analysis using STRING R package HOT 1
- enhanced visualization considering hierarchical nature of enrichment terms HOT 1
- include clusterProfiler ecosystem HOT 1
- include decoupleR HOT 1
- add GSVA (supported by latest GSEApy) HOT 1
- Enrichment analysis result visualisation using volcano plots (significance by effect-size) HOT 1
- Aggregate/visualize not working (because of empty output?) HOT 1
- investigate preranked GSEApy behaviour for +/-Inf scores HOT 1
- User provided databases
- complete documentation
- The results are not generating HOT 3
- Error in rule gene_ORA_GSEApy: jobid: 31, raise ValueError("No objects to concatenate") HOT 2
- Custom sample order in summary plots HOT 1
- include g:profiler from Elixier HOT 1
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