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3dunetcnn

Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

academic-kickstart

📝 Easily create a beautiful website using Academic, Hugo, and Netlify

axonsegmentation

buildbrain

caffe

Caffe: a fast open framework for deep learning.

common

compression

routines used for (de)archiving tif files used for mouselight project.

descriptor

diluvian

Flood filling networks for segmenting electron microscopy of neural tissue

ffn

Flood-Filling Networks for instance segmentation in 3d volumes.

heatmapanalysis

Analyze projection heatmap

imgclsmob

Sandbox for training deep learning networks

itkwidgets

Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D

keras

Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.

linescanfix

mergeh5

mhal-detect

M-HalDetect Dataset Release

mouse2syglass

Converts mouselight octree format to syglass tif

mouselight

mouselightcomputationalpipeline

navigator

neurom

Neuronal Morphology Analysis Tool

neuron-manuscript

Looks for topological pattern across axonal reconstructions without using any meta data, i.e. Allen labels, just based on data driven features.

nonparametricregistration

Old code utilizing kernel regression to register pointclouds. used for x-ray to ct registration

pipeline

mouselight pipeline

pipeline-axonclassifier

pipeline-buildbrain

pipeline-cleanuprenders

post script for archiving render files

pipeline-descriptor

pipeline-featmatch