Name: Daniel Lundin
Type: User
Company: Linnaeus University & Stockholm University
Bio: I work with protein evolution and microbial ecology. Nowadays using mostly R/tidyverse, I have a long history in computing involving several tools.
Location: Stockholm
16s_normalization
Script for the normalization of relative abundance out of DIAMOND default output (BLOSUM62 matrix) through a formula that relies on the 16S marker gene.
3diphy
Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n for
ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
any2fasta
Convert various sequence formats to FASTA
bioconda-recipes
Conda recipes for the bioconda channel.
biomakefiles
Library makefiles for various bioinformatic tools.
blast2matrix
burton
colourededgerxlsx
Outputs an xlsx file with one tab for each contrast in a table, with colours for SEED categories and heatmaps for logFC, logCPM and FDR.
dltemplates
Templates for various programming languages and tasks.
eemisdada2
Packaging of dada2
environmentmicrobedb
A Ruby on Rails application for microbial diversity data from natural environments
environmentmicrobedb-tools
eukulele
Automatic eukaryotic taxonomic classification
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
funcscan
(Meta-)genome screening for functional and natural product gene sequences
gff2tsv
R script that converts gff files to tsv, splitting the attribute field into separate fields.
gralign-tools
Scripts to reformat GR-Align output
hmmer_annotate
Tool(s) to annotate genes from hmmsearch results
hmmrank
Calculates a ranking of hmm profiles per sequence
idaea-bcn-2018
Data for the workshop at IDAEA in Barcelona November 2011.
ki20240422
largecountsjoin
magmap
Nextflow (nf-core) workflow for mapping reads to large collections of genomes.
maskaln
Protein multiple alignment masker
metatdenovo
milan_workshop_201905
Teaching material for the workshop in Milan May 2019
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nf-co.re
Code and files for the main nf-core website.
nf-core-ampliseq-symlink-bug
Repo for testing of potential symlink problem in Ampliseq
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
