Name: Institute of Environmental Science and Research
Type: Organization
Bio: ESR is New Zealand’s Crown Research Institute that specialises in science relating to people and communities.
Location: New Zealand
Blog: http://www.esr.cri.nz
Institute of Environmental Science and Research's Projects
MASC DC Workshop 28-29 May 2019
DC details for ESR KSC workshop
Data Analysis and Visualization in R for Ecologists
A pipeline for running AMRfinderPlus and collating results into functional classes
Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater
A companion document to the genomics data from NZ cases
Microbial genomics pipeline to build and analyse genome graphs
Genomics training week notes and install instructions
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
A GPU accelerated Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using bwa/GATK4.
CDCgov/mycosnp-nf
This repository is to make Annual Notifiable Disease Dashboard data public.
Data on prevalence of variants of concern in Aotearoa New Zealand
Point of care species ID by kraken2 ONT read classification for Xaiver platform
Snakemake workshop
training materials
A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.
Assembly and intrahost/low-frequency variant calling for viral samples