Comments (3)
CNVkit isn't currently designed to work on Python 3, but thanks for bringing this up. If you have a changeset that improves Python 3 compatibility, I'll see if I can merge it.
It looks like argparse has changed in some crucial way between Pythons 2.7 and 3.x, and that will require some futher investigation.
from cnvkit.
Hi - I have created a pull request with python3 compatibility
#100
from cnvkit.
I guess this can be closed @etal
from cnvkit.
Related Issues (20)
- CNVkit for RNA-seq: log2 in *.cnr file is all zero
- Error Installing CNVKit via Miniconda HOT 1
- Can I use cnvkit software to evaluate the copy number of genes ?
- TypeError and AttributeError when running 'cnvkit.py target baits.bed --annotate refFlat.txt --split -o targets.bed'
- question about the segment threshold
- cnvkit for multiple wgs cohort
- cnvkit.py export bed
- What's the mean of CN column?
- What format is the input bam file?
- what are the steps for Germline and Somatic CNV detection using CNVkit?
- Adding gene diagram to heat map
- Smoothing window fraction fix results in noisier data in targeted sequencing panel? HOT 1
- TypeError: batch_run_sample() takes from 16 to 17 positional arguments but 18 were given HOT 1
- sex allocation incorrect for males; antitarget used over target
- Best practices for creating a WGS pooled reference
- Need Help with generating Gene level Copy Number Ratio HOT 1
- pysam.idxstats
- cnvkit.py batch hangs on very large WGS dataset
- Runtime Error Using CNVKit Batch HOT 1
- Allow using reference fasta with reference cnn in cnvkit batch when processing crams HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cnvkit.