Comments (3)
etal
commented on August 28, 2024
Pending #39 -- the CWL tool will pull in its dependencies, apparently the New Way for Galaxy tools.
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etal
commented on August 28, 2024
See also #299 -- the Galaxy tool description might be broken now due to bit rot. Look into it, and fix if necessary.
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etal
commented on August 28, 2024
Closing in favor of #39.
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Related Issues (20)
- how to install the cnvkit v0.9.11 by the tar.gz source
- No Results HOT 1
- Installation error HOT 3
- Unable to produce .cnr files HOT 2
- Getting BAF and allelic imbalance in export vcf
- Improper post-processing of segment [bug]
- Unable to use fix without antitarget file for WGS samples
- Merging segments while running pipeline
- `segment` function fails HOT 1
- Somatic CNV calling in case of pre-existing CNVs
- Installation problems HOT 1
- Unable to load BED file with skgenome
- cnvkit.py segment error
- CNVkit segment command RuntimeError: Subprocess command failed
- access command: recommended -s (mingap) value
- Blank plots HOT 1
- Possible bug in bin sizes
- segment with cbs method - threshold
- call with filters cn, ci, sem
- Filtering single-cell false positive calls
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