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acosta-organoid-scrnaseq

Analysis of organoid lines modeling FTD with Alzheimer's-like phenotype

ad-exosome-characterisation

Analysis of exosomes in Alzheimer's Disease

autossh-autosetup

Script for setting up reverse AutoSSH

bag3-co-ip

Analysis of BAG3 Co-IP MS data

bag3-pathway-analysis

Pathway analysis of the BAG3 protein

chen-2020-st

Analysis of Spatial Transcriptomics data from Chen et al 2020

complexheatmap

Make Complex Heatmaps

crowley-visium-ec-stim

Analysis of Visium data from DREADD stimulated mice generated by Gerard Crowley at the Hong Lab at UK DRI at UCL

docker-xelatex-awesome-cv

Docker Image used to compile Awesome CV

dotfiles

Config files

fan1ko-ipsc-snrnaseq

Analysis of snRNAseq data from FAN1 KO iPSC lines

foiani-nft-lcm

habib-2017-snrnaseq

Analysis of Habib 2017 snRNAseq

ic-papers-analysis

Data mining of Intellicage papers

iss

Code for analysis of in situ sequencing

iss-microglia

Repo for in-situ sequencing (ISS) analysis of microglia

keeptotext

Convert a Google Takeout zip file containing Google Keep notes to a directory of text files, suitable for import into systems such as Evernote

lake-2016-snrnaseq

Analysis of Lake 2016 snRNAseq

lcm-nft-n1

Analysis of N of 1 LCM NFT Proteomics Data

misc-development

napari-wsireg

Whole slide image registration through wsireg in napari.

oxtr-ko-201703

Master thesis data on oxytocin receptor knockout mice

pathology-signatures

pivot-docker

Community-developed Docker container for the PIVOT transcriptomics platform

pymice-analyzer

A PyMICE project creator and pipeline manipulator

pymice-modules

Repository for PyMICE Intellicage paradigms, statistical methods, and display methods

pymice-notebook

Docker Jupyter Notebook for PyMICE Intellicage analysis

pymice-server

A web UI for server-based Intellicage analysis using PyMICE

pymice-tools

A meta repository for PyMICE submodules. This is the PyPI/Conda installable.

quick-omics

Repo for quick exploratory analyses