fafuyyk Goto Github PK

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angiosperm-karyotype-evolution

Angiosperm karyotype evolution

aristolochia_fimbriata_genome_analysis

Aristolochia fimbriata genome analysis

aster

Accurate Species Tree EstimatoR series: a family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL)

astral

Organize Your GitHub Stars With Ease

awesome-bioinformatics-cn

生物信息学软件，资源和工具库的精选列表

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

bowtie2-manual-cn

Bowtie2's manual in Chinese - Bowtie2中文使用手册

cattlegtex

The cattle Genotype-Tissue Expression atlas v1

easyspeciestree

Easily construct the ML species tree with single-copy gene shared by different species.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

filesaver.js

An HTML5 saveAs() FileSaver implementation

gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

how_are_we_stranded_here

Check strandedness of RNA-Seq fastq files

introngetting

Python scripts that getting ortholog EPIC sequences for phylogenomic analysis.

jbrowse-components

Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

juicebox

Visualization and analysis software for Hi-C data -

kakscalculator2

Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2

ltr_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

matplotlib-plotting

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

orthofinder

Phylogenetic orthology inference for comparative genomics

partitionfinder

PartitionFinder discovers optimal partitioning schemes for DNA sequences.

polycracker-unofficial-mirror

A robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5828-5

repeatable-module-collection

I am a newbie to python, I use this repository to save some of the more commonly used codes

sig-bio-shiny

A standalone interactive application for detecting biological significance on a set of genes

subphaser

Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.

synvisio

SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.