fanzhanglab Goto Github PK
Name: The Zhang Lab
Type: Organization
Bio: The Computational Omics and Systems Immunology (COSI) lab
Twitter: FanZhang_Jessie
Blog: https://fanzhanglab.org/
Name: The Zhang Lab
Type: Organization
Bio: The Computational Omics and Systems Immunology (COSI) lab
Twitter: FanZhang_Jessie
Blog: https://fanzhanglab.org/
Code for Zhang, Wei, Slowikowski, Fonseka, Rao, et al, Nature Immunology, 2019. Single-cell transcriptomics and proteomics data analysis and integration for rheumatoid arthritis synovial tissue. These integrative strategies can be generalized to any other diseases.
Source code for the At-Risk RA work
Bayesian modeling and inference in R
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
Global optimization for mixed membership matrix factorization for omics data. Code for Zhang, et al, 2019
Code for Zhang, et al, Genome Medicine, 2021. Cross-disease tissue data integration on single-cell transcriptomics
Code for our novel Variational Bayesian method for Zhang, Flaherty, BMC Bioinformatics, 2017. This is a Python-based tool for sensitive rare variant detection for NGS data.
We implemented and generalized single-cell functions and targeted analytical code for single-cell omics data analysis.
Uncover spatially informed shared variations underlying single-cell spatial transcriptomics with STew.
Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.
The Zhang Lab Manual: Lab principles and activities, Handbook for reproducible computational research, Learning resources, Expectations and achievements, etc
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.