fanzheng10 Goto Github PK
Name: Fan Zheng
Type: User
Bio: Computational Biologist. Network science/Cancer biology/Protein structure.
Twitter: fan_compbio
Location: San Diego
Fan Zheng's Projects
cleanedcode
Fan's code in Grigoryan lab
clixo-1.0
CliXO algorithm re-implemented
ddot
Toolkit for constructing, analyzing, and visualizing data-driven ontologies
decoupler
R package to infer biological activities from omics data using a collection of methods.
decoupler_manuscript
Code to reproduce the results from decoupleR's manuscript
decouplerbench
Package to benchmark methods from decoupleR
deepphos
hidef
HiDeF (Hierarchical community Decoding Framework)
hidef0
HiDeF (Hierarchical community Decoding Framework)
hisig
Enrichment analysis for nested and overlapping gene sets
machine-learning-for-proteins
Listing of papers about machine learning for proteins.
more-cancer-mutation-analysis
Analysis of mutations in new cohorts after TCGA, such as ICGC, CPTAC and GENIE, using the tools developed in the NeST paper
term-ddg
method for computing stability changes in proteins upon mutations, published in https://doi.org/10.1371/journal.pone.0178272
trips-viz
A transcriptome browser for Ribo-Seq and RNA-Seq data
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