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10xgenomics_scrnaseq_workflow

bayesian-analysis-with-python

Bayesian Analysis with Python by Packt

bio_trainning

The more hands-on, the more expert.

bioinf-python

Python for Bioinformatics

blog_pic

capybara

Capybara: A computational tool to measure cell identity and fate transitions

crc_dnb_gene

DNB gene Downstream analysis

crc_tex_dnb

Title: Identification of pre-exhaustion CD8+ T cell subpopulation and core genes as key role in T cell exhaustion by dynamic network biomarker

crc_wes_-analysis

developing_mouse_retina_scrnaseq

10x single cell RNA-seq data from the developing mouse retina

dhx_genes

dnb_macro

dnb_prefrontal-cortex

dynamo-release

Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

fusca

Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it contains two modules: 1) CellRouter, for reconstruction of complex single-cell trajectories, and 2) CellComm, to infer intercellular communication networks from scRNA-seq data.

geo-data-analysis

jash-good-idea-20200304-001

耕莘護專 ~ 示範的3D口罩折法(Jash-good-idea-20200304-001)

myblog

Using the hugo theme of cactus for my blog ( www.liuhuisheng.com ).

neti2

V1

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

orchestratingsinglecellanalysis

Content for the OSCA Book.

publication_otero2022_phloempoleatlas

analysis code for Otero et al 2020

quasildr

Quasilinear data representations for single-cell omics data analysis

reproducible-dnb-downstream-analysis

This repository contains colorectal cancer single cell transcriptome expression matrix data, pre-processing process; and visual analysis of downstream DNB genes, etc.

scenic

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

scenicprotocol

A scalable SCENIC workflow for single-cell gene regulatory network analysis

scissor

Scissor package

sclearn

scLearn：Learning for single cell assignment

scniche

a R package for HSC and MPP1-MPP5 cell-cell communication

scrnaseq_advanced_analysis