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4-exploratorydataanalysis_peerassessment1

bcalm

de Bruijn graph compaction in low memory

bgprouting_asrelationship

This is the code provided for our final project for FCN course (Fundamentals of Computer Networks). Our goal is finding ASes Relationships using their trace routes that we get from RIPE Atlas.

biomap

reduce dimensionality of the count matrix through biologically-aware dimensionality reduction

cmsc858_hw1

cmsc858_hw2

computationalbiology_549

cv

keep updated cv in this repository

datasciencecoursera

This repository is specifically created for the specialization "Data Science"

datasharing

This is the repository created for Dr. Leek readme file

fataltes.github.io

A simple homepage

feature_distribution

gc-project-repo

a repository for project of course "Getting and Cleaning Data"

herringshiny

Shiny codes for herring statistics and simulation results visualization

pathwaybot

A chatbot specialized in pathway-related questions

peerassessment1-repo

repository for peerAssessment 1 in Reproducable Research Course

personal-jekyll-theme

:bowtie: { Personal } Jekyll theme

prelim

quicknbs

Quick Ipython notebooks that are used to calculate some basic stats for different tools

rapclust_orphanreads

Extended version of rapclust that also counts on orphan reads in clustering the contigs.

rpe

My RPE document

rprogrammingassignment2

This is a repository to save trace of programming assignment 2

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

twopaco

A fast constructor of the compressed de Bruijn graph from many genomes