Comments (2)
it is being caused by that... i am going to post the nipype branch with the
fix on fcp-indi, today. I tried doing it yesterday for a while ... will ask
dan to do it...
On Mon, Sep 3, 2012 at 11:01 AM, Brian Cheung [email protected]:
Error output:
AttributeError Traceback (most recent call last)
/home/millskl/CPAC_files/FCP-INDI-C-PAC-7b14cf3/ in ()
----> 1 c['node'].run()/home/millskl/epd-7.3-2-rh3-x86_64/lib/python2.7/site-packages/nipype/pipeline/engine.pyc
in run(self, updatehash)
1058 self.config = merge_dict(deepcopy(config._sections), self.config)
1059 if not self._got_inputs:
-> 1060 self._get_inputs()
1061 self._got_inputs = True
1062 outdir = self.output_dir()/home/millskl/epd-7.3-2-rh3-x86_64/lib/python2.7/site-packages/nipype/pipeline/engine.pyc
in _get_inputs(self)
1204 output_name = info[1]
1205 try:
-> 1206 output_value = results.outputs.get()[output_name]
1207 except TypeError:
1208 output_value = results.outputs.dictcopy()[output_name]AttributeError: 'NoneType' object has no attribute 'get'
If this is being caused by the nipype datasink not being updated with the
new changes we need, can you post the fork easy to find?—
Reply to this email directly or view it on GitHubhttps://github.com//issues/64.
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i have transferred nipype with my fix to fcp-indi https://github.com/FCP-INDI/nipype ... this should fix it.
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Related Issues (20)
- 🚀 Release v1.8.7 HOT 1
- 🐛 [User-reported Bug] Not Reading In Slice Timing json in Bids Dataset
- 🐛 Freesurfer-based pipeline options cause a hang in a specific use case
- ♻️ Replace `logger.error; sys.exit` pattern with `raise SpecificException` pattern
- ♻️ DRY `isc.py` and `isfc.py`
- ♻️ DRY "Gathering the output file paths from" in `cpac_group_runner`
- 🎨 This `ts` isn't used anywhere. Do we care to assign it just to annotate, or should we drop this line?
- ♻️ Always or by default have Function nodes "as module"s?
- 🐛 PyPI's `bids_validator` does not include CLI
- 🐛 User-provided brain masks are not being read in to the resource list HOT 11
- 🐛 Functional preprocessing only pipeline not working HOT 2
- ♻️bids2table library for BIDS utils in CPAC, replacing and abstracting chunky utility functions
- 🐛 [User-reported Bug] ICA AROMA crashes with 'DataFrame' object has no attribute 'append'. Did you mean: '_append' error HOT 1
- ✨ Integrate interface for SynthStrip skull-stripping
- 🐛 The output for the resource `"space-fsLR_den-32k_desc-FS_strainJ"` is set to `"StrainJ_FS_dscalar"` and then reset to `"StrainJ_MSMSulc_dscalar"` three lines later.
- Prepare longitudinal pipeline to be standalone HOT 1
- 🐛 Processing freezes when multiple cores are assigned HOT 15
- 🐛 Possibly safer to use `-ort` in `3dTProject` for `SpikeRegression` instead
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