fedarko Goto Github PK

283-project

airplanefood

what's the deal with differential abundance

altair

Declarative statistical visualization library for Python

american-gut-web

The website for the American Gut Project participant portal

ampliviz

Visualizes breakpoint graphs generated by AmpliconArchitect; simulates the effects of long read data on the graph

aoc2023

Advent of Code 2023 solutions

astrobiomike.github.io

Site to help biologists wade their way into bioinformatics.

bambus3

Bambus3: A scaffolder for metagenomes

bioconda-recipes

Conda recipes for the bioconda channel.

biom-format

The Biological Observation Matrix (BIOM) Format Project

caip

Cellular Automata Implementation in Pygame/Python

chezbob

cogs220project

Combined chronological visualizations of news articles and tweets

colander

Estimating strain variation in metagenome assemblies

cse210-project

deicode

Robust Aitchison PCA from sparse count data

docs

Source repository for https://docs.qiime2.org

emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

empress

A very fast and scalable phylogenetic visualization viewer

empress-analyses

eukrep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets

feast

Fast expectation maximization for microbial source tracking

fedarko.github.io

Personal website

finalgrade

Android app that calculates final grade in a high school course based on quarter and exam grades; designed for courses in the Howard County Public School System (HCPSS)

flye

De novo assembler for single molecule sequencing reads using repeat graphs

fortnite-burger

gneiss

compositional data analysis toolbox

gvpt388lanalysis

Analysis code for GVPT 388L Policy Analysis (Spring 2018, UMD)

hartig-net

repo of blog style tutorials (some under construction), hopefully it creates some nice symbiosis

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats